Wednesday 24 August 2016

Breaking into the Circadian Clock

Japan Daily Press

Sometime in the future a person could be waking up after a short 16-hour snooze. Preparing a hearty meal to start their “day”, they will probably be thinking about the hours ahead of them. Maybe they have a night shift, a morning to see friends and family, a hobby to indulge in somewhere in-between. Time is cheap when you don’t have to sleep for another 36 hours.

This of course is fantasy, but could it eventually become a possibility  – or even a necessity? After all, society in the 21st century is “Open 24/7”. In crude terms of thinking, there is a need for us to adapt to our new social patterns.
A growing number of individuals in countries affluent and developing alike are taking on employment that requires work during hours that are deemed “unsociable”. Late-night bar workers, early-morning cleaners and night-shift security  – most people know at least one or two people who work in these sectors.
Working unsociable hours usually comes with better pay and more flexible free time in the day, but research is starting to uncover the dangerous long-term effects of an abnormal day/night cycle.

Following a rough 24-hour period and reacting to simple environmental elements, Circadian rhythms are our biological cycles that adhere to the light/dark cycle of the day. In humans they affect sleep cycles, hormone release, body temperature and many other important physiological factors. Abnormalities in these cycles can cause insomnia, depression and even obesity.
Psychology Blog
People experience the effects of going against their Circadian rhythms quite often; jet lag, lack of sleep and that groggy feeling you get after an afternoon nap are prime examples of what happens when your body is out of sync!

All human necessities are controlled subconsciously by our biological clocks, named so due to their tendency to cause the hand of our Circadian cycles to turn. These clocks drive all life, not just humans, and are genetically rigid in our make-up. Tucked in the hypothalamus part of the brain is a bundle of neurones called the Suprachiasmatic Nucleus (SCN). This construction of neurones is accepted to be the human Master Clock, the conductor of all of the other biological clocks.
Hijacking our own daily rhythms and biological routines would be a very complex ordeal, but we are starting to understand more about Circadian Rhythms.

To avoid the risks of obstructing our natural biological cycles we would need to modify our own physiology - our needs to rest and sleep (accepting that eating and drinking is, pretty much, impossible to avoid). Lots of our Circadian rhythms summate together to produce one large desired effect, which makes the “root” of each Circadian action hard to locate. Scientists at the University of Oxford have recently managed to pinpoint a very significant element involved in Drosophila (fruit fly) Circadian rhythms: a genetic “on-off switch” for sleep. Gero Miesenbock and team used light to turn on genetically modified cells that react to certain wavelengths, due to the presence of the gene. The light caused dopamine release, which inhibited sleep-promoting neurones, thus waking the flies.
Working directly with Drosophila’s neurones, Fang Guo at Brandeis University, Massachusetts, demonstrated an opposite effect: in the same type of fly, after activating neurons in a biological clock, glutamate is release which then turns off neurones in the part of the Master Clock that promotes activity.
Although we already know that dopamine in animals is generally related to active behaviour, and that glutamate inhibits areas of the SCN in humans, we can’t yet assume the same model seen in Drosophila as in more complex organisms. This type of research does, however, demonstrate that we have already started to pick-apart the inner workings of Circadian activity.

Looking at something closer to humans, Circadian rhythms in mice have been found to lengthen when caffeine is involved. We all know that coffee alters our sleep pattern, but researchers Oike, Kobori, Suzuki & Ishida found in 2011 that administering caffeine into the growth media of both human bone-cancer cells and mouse stem cells actually alters the length of the biological cycles. On an intracellular level it was seen that processes associated with high-level activity were extended, causing a lengthening shift in the whole “daily” cycle of the cell. Another experiment with caffeine was attempted which involved the stimulant being added to ex vivo (outside of organism) liver cells, which resulted in signal delays in the SCN – something that could be linked with the lengthening of the cycles.
To try something with a whole organism, the researchers ran a third test with live mice. “Limitless” supplies of caffeine were made available to the subjects for a week under normal light-dark conditions. The findings of this in vivo experiment were that the mice were indeed active later into their dark periods in comparison to the control group.
Although for these mice the administration of a caffeine fountain was a rudimentary way of modifying circadian rhythms, this study raises two interesting points: firstly, as conserved as the genetic foundations of these biorhythms are it is possible to modify them. Secondly, the modification of these cycles can be performed in complex, mammalian organisms and not just isolated tissue.

As our Circadian rhythms are firmly ingrained into our cells’ genetics, the cogitation of altering something so essential and, some could say, ancestral is a daunting task. Surely these axial genes that make up our natural rhythms are hard to get at? Yes, for now, but further specific advances in the field (which if you’re interested is called Chronobiology) have uncovered a clue to unmasking the “cogs” of the biological clock:
Scientists at the Salk Institute (CA) have discovered a tell-tale sign to identify the strength of someone’s Circadian rhythms. They were looking at the REV-ERBa structure, which is a particular receptor found on many genes associated with repressing transcription. The REV-ERBa is considered to be associated with inhibitory effects in biological clock activity, although the mechanism of its workings was previously unknown.

What the team at Salk found surrounding this gene was that 2 proteins work together to change REV-ERBa concentrations. They expected that this is an important mechanism used in biological clocks to lower levels of activity during night time, when an individual is asleep, and then raise levels again in the morning. The 2 proteins perform different tasks to “turn the hand” around on the biological clock; the F box protein FBXW7 selects REV-ERBa for degradation in the morning which causes activity levels to rise, and then Cyclin-dependent Kinase 1 (CDK1) phosphorylates REV-ERBa (a prominent sign of activation in biology) when activity levels become too high. What’s more interesting, is that when CDK1 phosphorylates REV-ERBa it is also signalling to FBXW7. This means that when REV-ERBa levels are very high (i.e. at night, again) FBXW7 is drawn to the component to begin the cycle all over again.
Zhao et al. (2016)

The importance of this study is that it identifies something that has not been seen before: Circadian rhythm amplitude. The strength of gene activation in these biological clocks is being controlled by 2 proteins, both dependent on each-other. If there were drugs that could potentially alter the levels of one, we would be able to not necessarily control our biological rhythms but at least steer them in the right direction. For example, If an early-morning shift worker found that they couldn’t settle-down to sleep early in the evening, they could take a drug that could induce an earlier CDK1 effect. This would lead to REV-ERBa levels increasing earlier on in the day, causing sleepiness earlier than normal and wakefulness earlier the next morning – just in time for a 5am shift.


It is very important that we understand that our biological rhythms have evolved with us over millions of years. They are crucial parts of our physiology, and although the studies explored in this article aim to show that they can be altered it must be stressed that we are a long way off from the future described in the first paragraph. For the time being we are as reliant on our natural Circadian rhythms as much as any other organism, but that doesn’t mean that our increasing knowledge of genetics can one day give us the controls to our own cycles.










Sources:

-         -  Piemental, D., Donlea, J.M., Talbot, C.B., Song, S.M., Thurston, A.J.F., & Miesenbock, G. (2016). Operation of a Homeostatic Sleep Switch. Nature, 536 , 333-337. doi: 10.1038/nature19055.
-        -   Guo, F., Yi, W., Zhou, M., & Guo, A. (2011). Go signalling in mushroom bodies regulates sleep in Drosophila. Sleep, 34 (3), 273-281. Retrieved from http://www.bio.brandeis.edu/rosbashlab/profile.php?imagename=fang.
-        -   Oike, H., Kobori, M., Suzuki, T. & Ishida, N. (2011) Caffeine lengthens circadian rhythms in mice. Biochem Biophys Res Commun, 410 (3), 654-658. doi: 10.1016/j.bbrc.2011.06.049
-        -   Zhao, X., Hirota, T., Han, X., Cho, H., Chong, L., Lamia, K. ... Evans, R.M. (2016). Circadian Amplitude Regulation via FBX27-Targeted REV-ERBa Degredation.Cell, 165 (7), 1644-1657. doi: http://dx.doi.org/10.1016/j.cell.2016.05.012.
a       - Psycology Blog image: http://a2levelpsychology.blogspot.co.uk/2015/06/a2-level-circadian-rhythm.html
         - Japan Daily Press image: http://japandailypress.com/know-your-body-clock-and-lose-weight-2810428/

-         -  Salk Institute. "Powering up the circadian rhythm." ScienceDaily. ScienceDaily, 26 May 2016. <www.sciencedaily.com/releases/2016/05/160526124908.htm>



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